In this work, we designed a setup to measure the proton, electron and thermal conductivity as well as the performance of a single ionomer or composite nanofiber. We developed a self-bonding method to fix the nanofiber on the micro-electrode. For proton and electron conductivity measurement, four-probe method was adopted to eliminate the electrical contact resistance and interfacial effect. For thermal conductivity measurement, Raman assisted steady state method was used to directly measure the temperature profile along the nanofiber. So, the measurement error resulting from the thermal contact resistance between the sample and the temperature sensor/heat sink can be eliminated. For performance measurement, three-electrode system was adopted using the Ag/AgCl electrode as the reference electrode and the Zn/ZnCl2 electrode as the counter electrode. We prepared nanofibers with different size, polymer content, and cross-sectional component distribution by controlling the ink recipe and electrospinning parameters. The integrated thermo-electric measurement found that the proton and thermal conductivity of nanofiber are one order of magnitude higher than bulk properties and increases with decreasing fiber radius. This is attributed to the oriented ionic morphology along the nanofiber. Furthermore, a nanofiber model was developed to extract the catalytic activity and gas diffusion coefficient of nanofiber. These characterization and modelling work can provide guidance to the design and optimization of catalyst layer with electrospun ionomer or composite nanofibers.