Natural Fiber Welding (NFW) is process that leverages the unique solvating power of ionic liquids (IL) to mobilize a natural fiber’s outermost polymer strands and enable these mobile polymers to reconfigure and interact with mobilized polymers of adjacent fibers. Upon removal of the ionic liquid via a solvent exchange and drying process, the biopolymer material is welded into a new matrix while still maintaining the vast majority of its native structural hierarchy. Recent work in our laboratory has shown relatively simple modifications to the NFW process can drastically impact the modified matrix morphology, particularly regarding surface structure. Changes in polarity during the solvent exchange process, for instance, can be used to very the surface area over a 1000-fold and produce high surface are materials with tunable mesoporosity. In the present work we investigate the impact of variable ionic liquid treatment time on the development of mesoporosity in fiber welded cotton substrates. Nitrogen gas adsorption/desorption measurements were employed to evaluate changes in surface area and pore size with ionic liquid treatment time. Raman spectroscopy was carried out on epoxy potted material cross sections to assess the impact of treatment time on cellulose decrystallization, and epoxy penetration measured by Raman spectroscopy was used to evaluate the continuity of the mesoporous regions and further asses material porosity.