The results show that the choice of the active interface in contact with the electrolyte determines the sensor response and selectivity (the signal) is relatively independent of the transducer. Ideally, protein recognition mechanisms are leveraged to allow only target proteins to attach to the surface, imparting signal selectivity. However, unwanted protein interactions with sensor surfaces cause signal instability and increase false-positive rates. Although commonly used to functionalize the sensing surface, carboxyl-terminated thiol self-assembled monolayers (COOH-SAMs) can have large defect densities, which in turn leads to large non-selective adsorption of proteins to hydrophobic surfaces exposed by these defects. A procedure is developed where the surface of COOH-SAMs is treated before functionalization to improve the reliability and quality of receptor attachment to the sensor surface. Beyond SAM-based sensors, there has been significant interest in biomedical applications of two-dimensional materials such as graphene, including potentiometric sensing. There is conflicting literature on to what extent interaction from the substrate are transmitted through a monolayer, and the subsequent effect on biomolecule interactions are unknown. Therefore, the degree to which the substrate influences graphene-protein interactions is explored. Finally, the choice of the readout transducer (e.g. a graphene transistor) is shown to influence the noise limit, and, hence, the signal-to-noise ratio. Models for diffusion, attachment, and electrical response of these sensors will be described that demonstrates good agreement to experimental data. Despite the current challenges facing label-free, portable biosensors, the work presented here provides a step towards reliable biosensing.