This talk will highlight recent work on understanding the reactions for metal and metal oxide deposition on functionalized (and patterned) surfaces and on recent advances in ALE of complex materials, specifically focused on tertiary alloys, such as CoFeB, used in magnetic tunnel junctions. I will outline the work needed to understand the mechanisms of these processes that can be further used to improve the control over atomically-precise manufacturing methods and to reduce the use of hazardous procedures. The relatively well-understood ALE procedures that include oxidation or chlorination as the first half-cycle of ALE of such materials and introduction of a bidentate ligands (such as acetylacetonates) to remove complex materials uniformly and with atomic-level control will be extended to describe the potential use of much milder conditions and reagents. A combination of experimental and computational methods will be used to make this analysis possible.